1. Introduction, evolution and taxonomy, cytology and morphology of microorganisms 2. Proliferation of microorganism, growth curve 3. Microbial genetics and metabolism 4. Microbial physiology, adaptations 5. Microbial ecology, competing strategies, ecological roles 6. Important symbioses - mycorrhiza, legumes, lichens? 7. Microorganisms in soil and their ecological roles 8. Microorganisms in water and air and their ecological roles 9. Extremophilic microorganisms 10. Biogeochemical cycles 11. Systematic overview of environmentally relevant bacteria, archea, fungi and protista 12. Research and development in the field, future perspectives
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BISEN, P. S., et al. Microbes: Concepts and Applications. Hoboken, N.J.: Wiley-Blackwell, 2012. ISBN: 9780470905944. (dostupná jako eBook ze sítě UJEP).
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PEPPER, I. L, GERBA, C. P., GENTRY, T. J. Chapter 1: Introduction to Environmental Microbiology. Environmental Microbiology, 2015. ISSN: 978-0-12-394626-3. (dostupná jako eBook ze sítě UJEP).
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SCHAECHTER, M, SCHMIDT, T. M. Topics in Ecological and Environmental Microbiology. Amsterdam: Elsevier Ltd, 2012. ISBN: 9780123838780. (dostupná jako eBook ze sítě UJEP).
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TREVORS, J. T, JANSSON, J, ELSAS, Jv. Modern soil microbiology. Boca Raton, London: Taylor & Francis, 2007. (Books in soils, plants, and the environment). ISBN: 978-0-8247-2749-9.
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