Course: Microfluidic systems in bioanalytical applications

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Course title Microfluidic systems in bioanalytical applications
Course code KBI/P612
Organizational form of instruction Lesson
Level of course Master
Year of study not specified
Semester Summer
Number of ECTS credits 5
Language of instruction Czech, English
Status of course Compulsory-optional
Form of instruction Face-to-face
Work placements This is not an internship
Recommended optional programme components None
Lecturer(s)
  • Štofik Marcel, Mgr. Ph.D.
Course content
The theoretical part of the course informs students about the history of microfluidic systems development and their potential in biological and biochemical analyses. Students will be introduced to the fundamental principles of microfluidic devices and to the main methods of their design. The main issues of the theoretical part are as follows: -History of microfluidic systems and their development - ?TAS systems, Lab-on-a-chip, BioMEMS - Fundamentals of physical principles of fluid mechanics in small scaled devices - The design technology and the materials for the preparation of microfluidic devices - Selected fields of use of microfluidic systems in biological applications The practical part is focused on specific design protocols and simple biological analyses by means of a prepared device. Laboratory protocols will be focused on the following working procedures: - Preparation of graphical designs of masks for UV lithography with graphics software - Preparation of substrates - substrates for fabrication of masks for UV-lithography. Chemical and ultrasonic cleaning. - Preparation of thin layers by sputtering method - preparation of seed layers and masks for electron beam lithography and UV-lithography, preparation of electrodes for electrochemical analysis. - Electron beam lithography - preparation of masks for UV-lithography using positive and negative resists. - UV lithography - preparation of masks for dry and wet etching and galvanic deposition, preparation of molds for soft lithography, microchannels fabrication. Positive and negative resists will be used. - Soft lithography - PDMS (polydimethylsiloxane) casting - Completion of the microfluidic device design - setting connectors and tubes on the device and connecting it to a detection device - Analysis - a simple electrochemical or optical sample analysis in a prepared device will be performed

Learning activities and teaching methods
unspecified
Learning outcomes
The course is designed for students of biological sciences. The aim of the course is to introduce students to the issues of microfluidic devices for analytical and bioanalytical purposes in the biological sciences.

Prerequisites
Teaching in English is meant only for erasmus and foreign students. In the case of a small number of students is teaching in a form of individual consultations.

Assessment methods and criteria
unspecified
Recommended literature
  • Dill K., Liu R., Grodzinski P. Microarrays: Preparation, Microfluidics, Detection Methods, and Biological Applications. Springer, 2007.
  • Husák M. Mikrosenzory a mikroaktuátory. Academia 2008.
  • Choudhury, R. Handbook of Microlithography, Micromachining and Microfabrication, Vols 1and 2, SPIE Press, 1997.
  • Madou, M. Fundamentals of Microfabrication, CRC Press, 2000.
  • Nguyen N., Wereley S. T. Fundamentals and Applications of Microfluidics. Artech House, 2006.
  • Paul C. H. Li. Microfluidic Lab-on-a-Chip for Chemical and Biological analysis and Discovery. CRC, 2005.
  • Tabeling P. Introduction to microfluidics. Oxford University Press, 2005.
  • Wang W. Soper S. A. Bio-MEMS Technologies and Applications. CRC, 2007.


Study plans that include the course
Faculty Study plan (Version) Category of Branch/Specialization Recommended year of study Recommended semester
Faculty: Faculty of Science Study plan (Version): Biology (A16) Category: Biology courses 2 Recommended year of study:2, Recommended semester: Summer